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Running Cromwell on AWS/Batch
- Posted: 2018-11-21.

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All Entries On bioinformatics

A total of 3 entries were found. Click on the titles to read the posts.

  • Compress all fastq/vcf files in a storage tree with a single command (2013-03-06 - Geert Vandeweyer)

    this was my command of the day: \"Laughing\"

  • Creating GATK VQSR plots (2013-05-15 - Geert Vandeweyer)
    

    GATK provides nice plots on the gaussian distributions used by the variant quality recalibration tool. 
    

     
    

    However, coverting the R-scripts to the actual pdf plots proved n...
  • Running Cromwell on AWS/Batch (2018-11-21 - Geert Vandeweyer)
    

    Cromwell is one of the widely used workflow managers used in bioinformatics to run NGS analysis pipelines. Based on the WDL workflow language, it supports runnings tasks as regular scripts or as co...